Integrated Protein Knowledgebase

The iProClass database provides value-added information reports for UniProtKB and unique UniParc proteins, with links to over 90 biological databases, including databases for protein families, functions and pathways, interactions, structures and structural classifications, genes and genomes, ontologies, literature, and taxonomy.

Keywords: protein, pathway, interaction, structure, classification, gene, genome, ontology

Homepage: http://pir.georgetown.edu/iproclass/

Organization: PIR

Identifier Regex Pattern: [A-Z]\d+

SPARQL Endpoint URL: http://cu.iproclass.bio2rdf.org/sparql

Faceted Browser URL: http://cu.iproclass.bio2rdf.org/fct

Conversion Script URL: http://github.com/bio2rdf/bio2rdf-scripts/tree/master/iproclass

Download URL: http://download.bio2rdf.org/#/release/3/iproclass

Basic metrics

Triples3306107223
Distinct Entities364255265
Distinct Properties36
Distinct Subjects364255265
Distinct Objects573048485
Distinct Literals1091463574
Distinct Types19

Types

Type Count
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource		 484101
genbank resource [genbank_vocabulary:Resource]
http://bio2rdf.org/genbank_vocabulary:Resource		 68498274
unigene resource [unigene_vocabulary:Resource]
http://bio2rdf.org/unigene_vocabulary:Resource		 506685
ensembl resource [ensembl_vocabulary:Resource]
http://bio2rdf.org/ensembl_vocabulary:Resource		 1195975
pfam resource [pfam_vocabulary:Resource]
http://bio2rdf.org/pfam_vocabulary:Resource		 14839
ipi resource [ipi_vocabulary:Resource]
http://bio2rdf.org/ipi_vocabulary:Resource		 257120
pdb resource [pdb_vocabulary:Resource]
http://bio2rdf.org/pdb_vocabulary:Resource		 247349
pubmed resource [pubmed_vocabulary:Resource]
http://bio2rdf.org/pubmed_vocabulary:Resource		 974573
uniparc resource [uniparc_vocabulary:Resource]
http://bio2rdf.org/uniparc_vocabulary:Resource		 31486979
gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource		 95540862
pirsf resource [pirsf_vocabulary:Resource]
http://bio2rdf.org/pirsf_vocabulary:Resource		 11766
refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource		 20380489
go resource [go_vocabulary:Resource]
http://bio2rdf.org/go_vocabulary:Resource		 22789
omim resource [omim_vocabulary:Resource]
http://bio2rdf.org/omim_vocabulary:Resource		 17916
ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource		 13878455
uniprot resource [uniprot_vocabulary:Resource]
http://bio2rdf.org/uniprot_vocabulary:Resource		 56555610
http://www.w3.org/2002/07/owl#DatatypeProperty 3
http://www.w3.org/2000/01/rdf-schema#Resource 17
http://bio2rdf.org/iproclass_vocabulary:Resource 74181457
http://www.w3.org/2002/07/owl#ObjectProperty 18
http://www.w3.org/ns/dcat#Distribution 2
http://purl.org/dc/terms/Dataset 2

Object Properties

Object Property Distinct Objects Total Objects
x pdb [iproclass_vocabulary:x-pdb]
http://bio2rdf.org/iproclass_vocabulary:x-pdb		 247347 250080
x gi [iproclass_vocabulary:x-gi]
http://bio2rdf.org/iproclass_vocabulary:x-gi		 95540862 96743567
x ensembl [iproclass_vocabulary:x-ensembl]
http://bio2rdf.org/iproclass_vocabulary:x-ensembl		 1195975 1196219
x refseq [iproclass_vocabulary:x-refseq]
http://bio2rdf.org/iproclass_vocabulary:x-refseq		 20380462 20517760
x omim [iproclass_vocabulary:x-omim]
http://bio2rdf.org/iproclass_vocabulary:x-omim		 17686 32451
x ncbigene [iproclass_vocabulary:x-ncbigene]
http://bio2rdf.org/iproclass_vocabulary:x-ncbigene		 13878451 14953032
x genbank [iproclass_vocabulary:x-genbank]
http://bio2rdf.org/iproclass_vocabulary:x-genbank		 68498274 119507043
x uniprot [iproclass_vocabulary:x-uniprot]
http://bio2rdf.org/iproclass_vocabulary:x-uniprot		 56555610 56555610
identifiers.org URI
http://bio2rdf.org/bio2rdf_vocabulary:x-identifiers.org		 194518081 194518081
x ipi [iproclass_vocabulary:x-ipi]
http://bio2rdf.org/iproclass_vocabulary:x-ipi		 257113 362353
x pfam [iproclass_vocabulary:x-pfam]
http://bio2rdf.org/iproclass_vocabulary:x-pfam		 14832 25357658
x unigene [iproclass_vocabulary:x-unigene]
http://bio2rdf.org/iproclass_vocabulary:x-unigene		 466179 660052
x pubmed [iproclass_vocabulary:x-pubmed]
http://bio2rdf.org/iproclass_vocabulary:x-pubmed		 974573 30733949
x uniparc [iproclass_vocabulary:x-uniparc]
http://bio2rdf.org/iproclass_vocabulary:x-uniparc		 31486979 56555602
x taxon [iproclass_vocabulary:x-taxon]
http://bio2rdf.org/iproclass_vocabulary:x-taxon		 483729 74181525
x pirsf [iproclass_vocabulary:x-pirsf]
http://bio2rdf.org/iproclass_vocabulary:x-pirsf		 11759 6758403
x go [iproclass_vocabulary:x-go]
http://bio2rdf.org/iproclass_vocabulary:x-go		 22782 195514153
http://rdfs.org/ns/void#inDataset 1 364255239
http://www.w3.org/ns/dcat#distribution 2 2
http://purl.org/dc/terms/source 1 1
http://www.w3.org/2000/01/rdf-schema#seeAlso 88497759 226178134
http://xmlns.com/foaf/0.1/page 2 2
http://purl.org/dc/terms/creator 1 1
http://purl.org/dc/terms/license 2 2
http://www.w3.org/1999/02/22-rdf-syntax-ns#type 22 364255281
http://purl.org/dc/terms/publisher 2 2

Datatype Properties

Datatype Property Distinct Literals Literals
Bio2RDF uri
http://bio2rdf.org/bio2rdf_vocabulary:uri		 364255239 364255239
Bio2RDF identifier
http://bio2rdf.org/bio2rdf_vocabulary:identifier		 362953013 364255237
Bio2RDF namespace
http://bio2rdf.org/bio2rdf_vocabulary:namespace		 18 364255239
http://www.w3.org/2000/01/rdf-schema#label 40 40
http://purl.org/dc/terms/title 18 18
http://purl.org/pav/retrievedOn 1 1
http://purl.org/dc/terms/format 3 3
http://purl.org/dc/terms/identifier 364255239 364255239
http://purl.org/dc/terms/created 1 1
http://purl.org/dc/terms/rights 3 4

Subject Type and Property

Unique Objects Total Objects Subject Type Property

Property and Object Type

Property Object Type Unique Objects Total Objects
x taxon [iproclass_vocabulary:x-taxon]
http://bio2rdf.org/iproclass_vocabulary:x-taxon		 taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource		 483729 74181525
x uniprot [iproclass_vocabulary:x-uniprot]
http://bio2rdf.org/iproclass_vocabulary:x-uniprot		 uniprot resource [uniprot_vocabulary:Resource]
http://bio2rdf.org/uniprot_vocabulary:Resource		 56555610 56555610
http://purl.org/dc/terms/source http://www.w3.org/ns/dcat#Distribution 1 1
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 364255239
http://www.w3.org/ns/dcat#distribution http://www.w3.org/ns/dcat#Distribution 2 2
x genbank [iproclass_vocabulary:x-genbank]
http://bio2rdf.org/iproclass_vocabulary:x-genbank		 genbank resource [genbank_vocabulary:Resource]
http://bio2rdf.org/genbank_vocabulary:Resource		 68498274 119507043
x uniparc [iproclass_vocabulary:x-uniparc]
http://bio2rdf.org/iproclass_vocabulary:x-uniparc		 uniparc resource [uniparc_vocabulary:Resource]
http://bio2rdf.org/uniparc_vocabulary:Resource		 31486979 56555602
x pirsf [iproclass_vocabulary:x-pirsf]
http://bio2rdf.org/iproclass_vocabulary:x-pirsf		 pirsf resource [pirsf_vocabulary:Resource]
http://bio2rdf.org/pirsf_vocabulary:Resource		 11759 6758403
x pdb [iproclass_vocabulary:x-pdb]
http://bio2rdf.org/iproclass_vocabulary:x-pdb		 pdb resource [pdb_vocabulary:Resource]
http://bio2rdf.org/pdb_vocabulary:Resource		 247347 250080
x unigene [iproclass_vocabulary:x-unigene]
http://bio2rdf.org/iproclass_vocabulary:x-unigene		 unigene resource [unigene_vocabulary:Resource]
http://bio2rdf.org/unigene_vocabulary:Resource		 466179 660052
x ensembl [iproclass_vocabulary:x-ensembl]
http://bio2rdf.org/iproclass_vocabulary:x-ensembl		 ensembl resource [ensembl_vocabulary:Resource]
http://bio2rdf.org/ensembl_vocabulary:Resource		 1195975 1196219
x ipi [iproclass_vocabulary:x-ipi]
http://bio2rdf.org/iproclass_vocabulary:x-ipi		 ipi resource [ipi_vocabulary:Resource]
http://bio2rdf.org/ipi_vocabulary:Resource		 257113 362353
x pfam [iproclass_vocabulary:x-pfam]
http://bio2rdf.org/iproclass_vocabulary:x-pfam		 pfam resource [pfam_vocabulary:Resource]
http://bio2rdf.org/pfam_vocabulary:Resource		 14832 25357658
x go [iproclass_vocabulary:x-go]
http://bio2rdf.org/iproclass_vocabulary:x-go		 go resource [go_vocabulary:Resource]
http://bio2rdf.org/go_vocabulary:Resource		 22782 195514153
x omim [iproclass_vocabulary:x-omim]
http://bio2rdf.org/iproclass_vocabulary:x-omim		 omim resource [omim_vocabulary:Resource]
http://bio2rdf.org/omim_vocabulary:Resource		 17686 32451
x ncbigene [iproclass_vocabulary:x-ncbigene]
http://bio2rdf.org/iproclass_vocabulary:x-ncbigene		 ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource		 13878451 14953032
x pubmed [iproclass_vocabulary:x-pubmed]
http://bio2rdf.org/iproclass_vocabulary:x-pubmed		 pubmed resource [pubmed_vocabulary:Resource]
http://bio2rdf.org/pubmed_vocabulary:Resource		 974573 30733949
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 17 364255239
x gi [iproclass_vocabulary:x-gi]
http://bio2rdf.org/iproclass_vocabulary:x-gi		 gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource		 95540862 96743567
x refseq [iproclass_vocabulary:x-refseq]
http://bio2rdf.org/iproclass_vocabulary:x-refseq		 refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource		 20380462 20517760

Type-Property-Type List

Total Subjects Distinct Subjects Subject Type Property Object Type Distinct Objects Total Objects

Dataset-Property-Dataset List

Dataset Property Dataset
iproclass x omim [iproclass_vocabulary:x-omim]
http://bio2rdf.org/iproclass_vocabulary:x-omim		 omim
iproclass x go [iproclass_vocabulary:x-go]
http://bio2rdf.org/iproclass_vocabulary:x-go		 go
iproclass x pfam [iproclass_vocabulary:x-pfam]
http://bio2rdf.org/iproclass_vocabulary:x-pfam		 pfam
iproclass x ipi [iproclass_vocabulary:x-ipi]
http://bio2rdf.org/iproclass_vocabulary:x-ipi		 ipi
iproclass x unigene [iproclass_vocabulary:x-unigene]
http://bio2rdf.org/iproclass_vocabulary:x-unigene		 unigene
iproclass x refseq [iproclass_vocabulary:x-refseq]
http://bio2rdf.org/iproclass_vocabulary:x-refseq		 refseq
iproclass x gi [iproclass_vocabulary:x-gi]
http://bio2rdf.org/iproclass_vocabulary:x-gi		 gi
iproclass x uniparc [iproclass_vocabulary:x-uniparc]
http://bio2rdf.org/iproclass_vocabulary:x-uniparc		 uniparc
iproclass x taxon [iproclass_vocabulary:x-taxon]
http://bio2rdf.org/iproclass_vocabulary:x-taxon		 taxonomy
iproclass x pirsf [iproclass_vocabulary:x-pirsf]
http://bio2rdf.org/iproclass_vocabulary:x-pirsf		 pirsf
iproclass x pubmed [iproclass_vocabulary:x-pubmed]
http://bio2rdf.org/iproclass_vocabulary:x-pubmed		 pubmed
iproclass x genbank [iproclass_vocabulary:x-genbank]
http://bio2rdf.org/iproclass_vocabulary:x-genbank		 genbank
iproclass x ncbigene [iproclass_vocabulary:x-ncbigene]
http://bio2rdf.org/iproclass_vocabulary:x-ncbigene		 ncbigene
iproclass x ensembl [iproclass_vocabulary:x-ensembl]
http://bio2rdf.org/iproclass_vocabulary:x-ensembl		 ensembl
iproclass x pdb [iproclass_vocabulary:x-pdb]
http://bio2rdf.org/iproclass_vocabulary:x-pdb		 pdb
iproclass x uniprot [iproclass_vocabulary:x-uniprot]
http://bio2rdf.org/iproclass_vocabulary:x-uniprot		 uniprot