NCBI Taxonomy

The NCBI taxonomy database contains the names of all organisms that are represented in the genetic databases with at least one nucleotide or protein sequence.

Keywords: DNA, protein, structure, classification

Homepage: http://www.ncbi.nlm.nih.gov/taxonomy

Organization: NCBI

License: license

Identifier Regex Pattern: ^\d+$

SPARQL Endpoint URL: http://cu.taxonomy.bio2rdf.org/sparql

Faceted Browser URL: http://cu.taxonomy.bio2rdf.org/fct

Conversion Script URL: http://github.com/bio2rdf/bio2rdf-scripts/tree/master/taxonomy

Download URL: http://download.bio2rdf.org/release/3/taxonomy

Basic metrics

Triples21310356
Distinct Entities1147211
Distinct Properties55
Distinct Subjects1147211
Distinct Objects1267303
Distinct Literals5245060
Distinct Types13

Types

Type Count
obi resource [obi_vocabulary:Resource]
http://bio2rdf.org/obi_vocabulary:Resource
23
Citation [taxonomy_vocabulary:Citation]
http://bio2rdf.org/taxonomy_vocabulary:Citation
33583
taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
1147171
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
1147171
http resource [http_vocabulary:Resource]
http://bio2rdf.org/http_vocabulary:Resource
3
Taxonomic Division [taxonomy_vocabulary:Division]
http://bio2rdf.org/taxonomy_vocabulary:Division
12
Genetic Code [taxonomy_vocabulary:Genetic-Code]
http://bio2rdf.org/taxonomy_vocabulary:Genetic-Code
20
Embl-code [taxonomy_vocabulary:Embl-code]
http://bio2rdf.org/taxonomy_vocabulary:Embl-code
677
Rank [taxonomy_vocabulary:Rank]
http://bio2rdf.org/taxonomy_vocabulary:Rank
29
doi resource [doi_vocabulary:Resource]
http://bio2rdf.org/doi_vocabulary:Resource
2
http://www.w3.org/2002/07/owl#ObjectProperty 8
http://purl.org/dc/terms/Dataset 1
http://www.w3.org/2002/07/owl#Class 1112816
http://www.w3.org/2000/01/rdf-schema#Resource 4
http://www.w3.org/2002/07/owl#DatatypeProperty 31
http://www.w3.org/ns/dcat#Distribution 2

Object Properties

Object Property Distinct Objects Total Objects
embl code [taxonomy_vocabulary:embl-code]
http://bio2rdf.org/taxonomy_vocabulary:embl-code
677 1112811
citation [taxonomy_vocabulary:citation]
http://bio2rdf.org/taxonomy_vocabulary:citation
32608 327935
division id [taxonomy_vocabulary:division-id]
http://bio2rdf.org/taxonomy_vocabulary:division-id
12 1112811
mitochondrial genetic code id [taxonomy_vocabulary:mitochondrial-genetic-code-id]
http://bio2rdf.org/taxonomy_vocabulary:mitochondrial-genetic-code-id
15 1112811
rank [taxonomy_vocabulary:rank]
http://bio2rdf.org/taxonomy_vocabulary:rank
29 1112811
identifiers.org URI
http://bio2rdf.org/bio2rdf_vocabulary:x-identifiers.org
1112836 1112836
genetic code id [taxonomy_vocabulary:genetic-code-id]
http://bio2rdf.org/taxonomy_vocabulary:genetic-code-id
9 1112811
http://purl.org/dc/terms/creator 1 1
http://www.w3.org/1999/02/22-rdf-syntax-ns#type 15 2294382
http://xmlns.com/foaf/0.1/page 2 2
http://rdfs.org/ns/void#inDataset 1 1147199
http://purl.org/dc/terms/publisher 2 2
http://www.w3.org/ns/dcat#distribution 2 2
http://www.w3.org/2000/01/rdf-schema#seeAlso 6708 11288
http://purl.org/dc/terms/license 2 2
http://purl.org/dc/terms/source 1 1
http://www.w3.org/2000/01/rdf-schema#subClassOf 114388 1112811

Datatype Properties

Datatype Property Distinct Literals Literals
includes [taxonomy_vocabulary:includes]
http://bio2rdf.org/taxonomy_vocabulary:includes
18097 18104
synonym [taxonomy_vocabulary:synonym]
http://bio2rdf.org/taxonomy_vocabulary:synonym
180843 180912
inherited division [taxonomy_vocabulary:inherited-division]
http://bio2rdf.org/taxonomy_vocabulary:inherited-division
2 1112811
citation key [taxonomy_vocabulary:citation-key]
http://bio2rdf.org/taxonomy_vocabulary:citation-key
33125 33137
inherited mitochondrial genetic code [taxonomy_vocabulary:inherited-mitochondrial-genetic-code]
http://bio2rdf.org/taxonomy_vocabulary:inherited-mitochondrial-genetic-code
2 1112811
inherited genetic code [taxonomy_vocabulary:inherited-genetic-code]
http://bio2rdf.org/taxonomy_vocabulary:inherited-genetic-code
2 1112811
teleomorph [taxonomy_vocabulary:teleomorph]
http://bio2rdf.org/taxonomy_vocabulary:teleomorph
205 205
genbank acronym [taxonomy_vocabulary:genbank-acronym]
http://bio2rdf.org/taxonomy_vocabulary:genbank-acronym
400 401
in part [taxonomy_vocabulary:in-part]
http://bio2rdf.org/taxonomy_vocabulary:in-part
212 416
equivalent name [taxonomy_vocabulary:equivalent-name]
http://bio2rdf.org/taxonomy_vocabulary:equivalent-name
19613 19621
genbank anamorph [taxonomy_vocabulary:genbank-anamorph]
http://bio2rdf.org/taxonomy_vocabulary:genbank-anamorph
139 139
text [taxonomy_vocabulary:text]
http://bio2rdf.org/taxonomy_vocabulary:text
29330 30798
genbank common name [taxonomy_vocabulary:genbank-common-name]
http://bio2rdf.org/taxonomy_vocabulary:genbank-common-name
23616 23847
acronym [taxonomy_vocabulary:acronym]
http://bio2rdf.org/taxonomy_vocabulary:acronym
905 935
misnomer [taxonomy_vocabulary:misnomer]
http://bio2rdf.org/taxonomy_vocabulary:misnomer
1303 1303
Bio2RDF uri
http://bio2rdf.org/bio2rdf_vocabulary:uri
1147199 1147199
translation table [taxonomy_vocabulary:translation-table]
http://bio2rdf.org/taxonomy_vocabulary:translation-table
18 19
blast name [taxonomy_vocabulary:blast-name]
http://bio2rdf.org/taxonomy_vocabulary:blast-name
225 226
genbank synonym [taxonomy_vocabulary:genbank-synonym]
http://bio2rdf.org/taxonomy_vocabulary:genbank-synonym
1998 1998
scientific name [taxonomy_vocabulary:scientific-name]
http://bio2rdf.org/taxonomy_vocabulary:scientific-name
1108208 1112811
comment [taxonomy_vocabulary:comment]
http://bio2rdf.org/taxonomy_vocabulary:comment
2 2
Bio2RDF identifier
http://bio2rdf.org/bio2rdf_vocabulary:identifier
1147197 1147197
misspelling [taxonomy_vocabulary:misspelling]
http://bio2rdf.org/taxonomy_vocabulary:misspelling
21564 21578
Bio2RDF namespace
http://bio2rdf.org/bio2rdf_vocabulary:namespace
6 1147199
anamorph [taxonomy_vocabulary:anamorph]
http://bio2rdf.org/taxonomy_vocabulary:anamorph
415 416
authority [taxonomy_vocabulary:authority]
http://bio2rdf.org/taxonomy_vocabulary:authority
193467 193478
division code [taxonomy_vocabulary:division-code]
http://bio2rdf.org/taxonomy_vocabulary:division-code
12 12
start codons [taxonomy_vocabulary:start-codons]
http://bio2rdf.org/taxonomy_vocabulary:start-codons
10 19
unique name [taxonomy_vocabulary:unique-name]
http://bio2rdf.org/taxonomy_vocabulary:unique-name
23220 23220
type material [taxonomy_vocabulary:type-material]
http://bio2rdf.org/taxonomy_vocabulary:type-material
66894 67154
common name [taxonomy_vocabulary:common-name]
http://bio2rdf.org/taxonomy_vocabulary:common-name
13368 13567
http://purl.org/dc/terms/created 1 1
http://purl.org/pav/retrievedOn 1 1
http://purl.org/dc/terms/rights 4 4
http://purl.org/dc/terms/format 2 2
http://www.w3.org/2000/01/rdf-schema#label 34372 34372
http://purl.org/dc/terms/identifier 1147199 1147199
http://purl.org/dc/terms/title 33902 33915

Subject Type and Property

Unique Objects Total Objects Subject Type Property

Property and Object Type

Property Object Type Unique Objects Total Objects
citation [taxonomy_vocabulary:citation]
http://bio2rdf.org/taxonomy_vocabulary:citation
Citation [taxonomy_vocabulary:Citation]
http://bio2rdf.org/taxonomy_vocabulary:Citation
32608 327935
embl code [taxonomy_vocabulary:embl-code]
http://bio2rdf.org/taxonomy_vocabulary:embl-code
taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
677 1112811
embl code [taxonomy_vocabulary:embl-code]
http://bio2rdf.org/taxonomy_vocabulary:embl-code
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
677 1112811
rank [taxonomy_vocabulary:rank]
http://bio2rdf.org/taxonomy_vocabulary:rank
taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
29 1112811
rank [taxonomy_vocabulary:rank]
http://bio2rdf.org/taxonomy_vocabulary:rank
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
29 1112811
genetic code id [taxonomy_vocabulary:genetic-code-id]
http://bio2rdf.org/taxonomy_vocabulary:genetic-code-id
taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
9 1112811
genetic code id [taxonomy_vocabulary:genetic-code-id]
http://bio2rdf.org/taxonomy_vocabulary:genetic-code-id
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
9 1112811
citation [taxonomy_vocabulary:citation]
http://bio2rdf.org/taxonomy_vocabulary:citation
taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
32608 327935
citation [taxonomy_vocabulary:citation]
http://bio2rdf.org/taxonomy_vocabulary:citation
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
32608 327935
mitochondrial genetic code id [taxonomy_vocabulary:mitochondrial-genetic-code-id]
http://bio2rdf.org/taxonomy_vocabulary:mitochondrial-genetic-code-id
taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
15 1112811
mitochondrial genetic code id [taxonomy_vocabulary:mitochondrial-genetic-code-id]
http://bio2rdf.org/taxonomy_vocabulary:mitochondrial-genetic-code-id
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
15 1112811
division id [taxonomy_vocabulary:division-id]
http://bio2rdf.org/taxonomy_vocabulary:division-id
taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
12 1112811
division id [taxonomy_vocabulary:division-id]
http://bio2rdf.org/taxonomy_vocabulary:division-id
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
12 1112811
division id [taxonomy_vocabulary:division-id]
http://bio2rdf.org/taxonomy_vocabulary:division-id
Taxonomic Division [taxonomy_vocabulary:Division]
http://bio2rdf.org/taxonomy_vocabulary:Division
12 1112811
genetic code id [taxonomy_vocabulary:genetic-code-id]
http://bio2rdf.org/taxonomy_vocabulary:genetic-code-id
Genetic Code [taxonomy_vocabulary:Genetic-Code]
http://bio2rdf.org/taxonomy_vocabulary:Genetic-Code
9 1112811
mitochondrial genetic code id [taxonomy_vocabulary:mitochondrial-genetic-code-id]
http://bio2rdf.org/taxonomy_vocabulary:mitochondrial-genetic-code-id
Genetic Code [taxonomy_vocabulary:Genetic-Code]
http://bio2rdf.org/taxonomy_vocabulary:Genetic-Code
15 1112811
embl code [taxonomy_vocabulary:embl-code]
http://bio2rdf.org/taxonomy_vocabulary:embl-code
Embl-code [taxonomy_vocabulary:Embl-code]
http://bio2rdf.org/taxonomy_vocabulary:Embl-code
677 1112811
rank [taxonomy_vocabulary:rank]
http://bio2rdf.org/taxonomy_vocabulary:rank
Rank [taxonomy_vocabulary:Rank]
http://bio2rdf.org/taxonomy_vocabulary:Rank
29 1112811
http://www.w3.org/2000/01/rdf-schema#seeAlso obi resource [obi_vocabulary:Resource]
http://bio2rdf.org/obi_vocabulary:Resource
22 31
http://www.w3.org/1999/02/22-rdf-syntax-ns#type taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
5 34321
http://www.w3.org/1999/02/22-rdf-syntax-ns#type taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
5 34321
http://www.w3.org/2000/01/rdf-schema#subClassOf taxonomy_resource resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
114388 1112811
http://www.w3.org/2000/01/rdf-schema#subClassOf taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
114388 1112811
http://www.w3.org/2000/01/rdf-schema#seeAlso http resource [http_vocabulary:Resource]
http://bio2rdf.org/http_vocabulary:Resource
3 3
http://www.w3.org/2000/01/rdf-schema#seeAlso doi resource [doi_vocabulary:Resource]
http://bio2rdf.org/doi_vocabulary:Resource
2 2
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class 5 34321
http://www.w3.org/ns/dcat#distribution http://www.w3.org/ns/dcat#Distribution 2 2
http://www.w3.org/2000/01/rdf-schema#subClassOf http://www.w3.org/2002/07/owl#Class 114388 1112811
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 1147199
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 4 1147199
http://purl.org/dc/terms/source http://www.w3.org/ns/dcat#Distribution 1 1

Type-Property-Type List

Total Subjects Distinct Subjects Subject Type Property Object Type Distinct Objects Total Objects

Dataset-Property-Dataset List

Dataset Property Dataset
taxonomy http://www.w3.org/2000/01/rdf-schema#seeAlso obi
taxonomy http://www.w3.org/2000/01/rdf-schema#seeAlso doi
taxonomy http://www.w3.org/2000/01/rdf-schema#seeAlso http