Integrated Protein Knowledgebase

The iProClass database provides value-added information reports for UniProtKB and unique UniParc proteins, with links to over 90 biological databases, including databases for protein families, functions and pathways, interactions, structures and structural classifications, genes and genomes, ontologies, literature, and taxonomy.

Keywords: protein, pathway, interaction, structure, classification, gene, genome, ontology

Homepage: http://pir.georgetown.edu/iproclass/

Organization: PIR

Identifier Regex Pattern: [A-Z]\d+

SPARQL Endpoint URL: http://cu.iproclass.bio2rdf.org/sparql

Faceted Browser URL: http://cu.iproclass.bio2rdf.org/fct

Conversion Script URL: http://github.com/bio2rdf/bio2rdf-scripts/tree/master/iproclass

Download URL: http://download.bio2rdf.org/release/3/iproclass

Basic metrics

Triples3306107223
Distinct Entities364255265
Distinct Properties36
Distinct Subjects364255265
Distinct Objects573048485
Distinct Literals1091463574
Distinct Types19

Types

Type Count
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
484101
genbank resource [genbank_vocabulary:Resource]
http://bio2rdf.org/genbank_vocabulary:Resource
68498274
unigene resource [unigene_vocabulary:Resource]
http://bio2rdf.org/unigene_vocabulary:Resource
506685
ensembl resource [ensembl_vocabulary:Resource]
http://bio2rdf.org/ensembl_vocabulary:Resource
1195975
pfam resource [pfam_vocabulary:Resource]
http://bio2rdf.org/pfam_vocabulary:Resource
14839
ipi resource [ipi_vocabulary:Resource]
http://bio2rdf.org/ipi_vocabulary:Resource
257120
pdb resource [pdb_vocabulary:Resource]
http://bio2rdf.org/pdb_vocabulary:Resource
247349
pubmed resource [pubmed_vocabulary:Resource]
http://bio2rdf.org/pubmed_vocabulary:Resource
974573
uniparc resource [uniparc_vocabulary:Resource]
http://bio2rdf.org/uniparc_vocabulary:Resource
31486979
gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource
95540862
pirsf resource [pirsf_vocabulary:Resource]
http://bio2rdf.org/pirsf_vocabulary:Resource
11766
refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource
20380489
go resource [go_vocabulary:Resource]
http://bio2rdf.org/go_vocabulary:Resource
22789
omim resource [omim_vocabulary:Resource]
http://bio2rdf.org/omim_vocabulary:Resource
17916
ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource
13878455
uniprot resource [uniprot_vocabulary:Resource]
http://bio2rdf.org/uniprot_vocabulary:Resource
56555610
http://www.w3.org/2002/07/owl#DatatypeProperty 3
http://www.w3.org/2000/01/rdf-schema#Resource 17
http://bio2rdf.org/iproclass_vocabulary:Resource 74181457
http://www.w3.org/2002/07/owl#ObjectProperty 18
http://www.w3.org/ns/dcat#Distribution 2
http://purl.org/dc/terms/Dataset 2

Object Properties

Object Property Distinct Objects Total Objects
x pdb [iproclass_vocabulary:x-pdb]
http://bio2rdf.org/iproclass_vocabulary:x-pdb
247347 250080
x gi [iproclass_vocabulary:x-gi]
http://bio2rdf.org/iproclass_vocabulary:x-gi
95540862 96743567
x ensembl [iproclass_vocabulary:x-ensembl]
http://bio2rdf.org/iproclass_vocabulary:x-ensembl
1195975 1196219
x refseq [iproclass_vocabulary:x-refseq]
http://bio2rdf.org/iproclass_vocabulary:x-refseq
20380462 20517760
x omim [iproclass_vocabulary:x-omim]
http://bio2rdf.org/iproclass_vocabulary:x-omim
17686 32451
x ncbigene [iproclass_vocabulary:x-ncbigene]
http://bio2rdf.org/iproclass_vocabulary:x-ncbigene
13878451 14953032
x genbank [iproclass_vocabulary:x-genbank]
http://bio2rdf.org/iproclass_vocabulary:x-genbank
68498274 119507043
x uniprot [iproclass_vocabulary:x-uniprot]
http://bio2rdf.org/iproclass_vocabulary:x-uniprot
56555610 56555610
identifiers.org URI
http://bio2rdf.org/bio2rdf_vocabulary:x-identifiers.org
194518081 194518081
x ipi [iproclass_vocabulary:x-ipi]
http://bio2rdf.org/iproclass_vocabulary:x-ipi
257113 362353
x pfam [iproclass_vocabulary:x-pfam]
http://bio2rdf.org/iproclass_vocabulary:x-pfam
14832 25357658
x unigene [iproclass_vocabulary:x-unigene]
http://bio2rdf.org/iproclass_vocabulary:x-unigene
466179 660052
x pubmed [iproclass_vocabulary:x-pubmed]
http://bio2rdf.org/iproclass_vocabulary:x-pubmed
974573 30733949
x uniparc [iproclass_vocabulary:x-uniparc]
http://bio2rdf.org/iproclass_vocabulary:x-uniparc
31486979 56555602
x taxon [iproclass_vocabulary:x-taxon]
http://bio2rdf.org/iproclass_vocabulary:x-taxon
483729 74181525
x pirsf [iproclass_vocabulary:x-pirsf]
http://bio2rdf.org/iproclass_vocabulary:x-pirsf
11759 6758403
x go [iproclass_vocabulary:x-go]
http://bio2rdf.org/iproclass_vocabulary:x-go
22782 195514153
http://rdfs.org/ns/void#inDataset 1 364255239
http://www.w3.org/ns/dcat#distribution 2 2
http://purl.org/dc/terms/source 1 1
http://www.w3.org/2000/01/rdf-schema#seeAlso 88497759 226178134
http://xmlns.com/foaf/0.1/page 2 2
http://purl.org/dc/terms/creator 1 1
http://purl.org/dc/terms/license 2 2
http://www.w3.org/1999/02/22-rdf-syntax-ns#type 22 364255281
http://purl.org/dc/terms/publisher 2 2

Datatype Properties

Datatype Property Distinct Literals Literals
Bio2RDF uri
http://bio2rdf.org/bio2rdf_vocabulary:uri
364255239 364255239
Bio2RDF identifier
http://bio2rdf.org/bio2rdf_vocabulary:identifier
362953013 364255237
Bio2RDF namespace
http://bio2rdf.org/bio2rdf_vocabulary:namespace
18 364255239
http://www.w3.org/2000/01/rdf-schema#label 40 40
http://purl.org/dc/terms/title 18 18
http://purl.org/pav/retrievedOn 1 1
http://purl.org/dc/terms/format 3 3
http://purl.org/dc/terms/identifier 364255239 364255239
http://purl.org/dc/terms/created 1 1
http://purl.org/dc/terms/rights 3 4

Subject Type and Property

Unique Objects Total Objects Subject Type Property

Property and Object Type

Property Object Type Unique Objects Total Objects
x taxon [iproclass_vocabulary:x-taxon]
http://bio2rdf.org/iproclass_vocabulary:x-taxon
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
483729 74181525
x uniprot [iproclass_vocabulary:x-uniprot]
http://bio2rdf.org/iproclass_vocabulary:x-uniprot
uniprot resource [uniprot_vocabulary:Resource]
http://bio2rdf.org/uniprot_vocabulary:Resource
56555610 56555610
http://purl.org/dc/terms/source http://www.w3.org/ns/dcat#Distribution 1 1
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 364255239
http://www.w3.org/ns/dcat#distribution http://www.w3.org/ns/dcat#Distribution 2 2
x genbank [iproclass_vocabulary:x-genbank]
http://bio2rdf.org/iproclass_vocabulary:x-genbank
genbank resource [genbank_vocabulary:Resource]
http://bio2rdf.org/genbank_vocabulary:Resource
68498274 119507043
x uniparc [iproclass_vocabulary:x-uniparc]
http://bio2rdf.org/iproclass_vocabulary:x-uniparc
uniparc resource [uniparc_vocabulary:Resource]
http://bio2rdf.org/uniparc_vocabulary:Resource
31486979 56555602
x pirsf [iproclass_vocabulary:x-pirsf]
http://bio2rdf.org/iproclass_vocabulary:x-pirsf
pirsf resource [pirsf_vocabulary:Resource]
http://bio2rdf.org/pirsf_vocabulary:Resource
11759 6758403
x pdb [iproclass_vocabulary:x-pdb]
http://bio2rdf.org/iproclass_vocabulary:x-pdb
pdb resource [pdb_vocabulary:Resource]
http://bio2rdf.org/pdb_vocabulary:Resource
247347 250080
x unigene [iproclass_vocabulary:x-unigene]
http://bio2rdf.org/iproclass_vocabulary:x-unigene
unigene resource [unigene_vocabulary:Resource]
http://bio2rdf.org/unigene_vocabulary:Resource
466179 660052
x ensembl [iproclass_vocabulary:x-ensembl]
http://bio2rdf.org/iproclass_vocabulary:x-ensembl
ensembl resource [ensembl_vocabulary:Resource]
http://bio2rdf.org/ensembl_vocabulary:Resource
1195975 1196219
x ipi [iproclass_vocabulary:x-ipi]
http://bio2rdf.org/iproclass_vocabulary:x-ipi
ipi resource [ipi_vocabulary:Resource]
http://bio2rdf.org/ipi_vocabulary:Resource
257113 362353
x pfam [iproclass_vocabulary:x-pfam]
http://bio2rdf.org/iproclass_vocabulary:x-pfam
pfam resource [pfam_vocabulary:Resource]
http://bio2rdf.org/pfam_vocabulary:Resource
14832 25357658
x go [iproclass_vocabulary:x-go]
http://bio2rdf.org/iproclass_vocabulary:x-go
go resource [go_vocabulary:Resource]
http://bio2rdf.org/go_vocabulary:Resource
22782 195514153
x omim [iproclass_vocabulary:x-omim]
http://bio2rdf.org/iproclass_vocabulary:x-omim
omim resource [omim_vocabulary:Resource]
http://bio2rdf.org/omim_vocabulary:Resource
17686 32451
x ncbigene [iproclass_vocabulary:x-ncbigene]
http://bio2rdf.org/iproclass_vocabulary:x-ncbigene
ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource
13878451 14953032
x pubmed [iproclass_vocabulary:x-pubmed]
http://bio2rdf.org/iproclass_vocabulary:x-pubmed
pubmed resource [pubmed_vocabulary:Resource]
http://bio2rdf.org/pubmed_vocabulary:Resource
974573 30733949
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 17 364255239
x gi [iproclass_vocabulary:x-gi]
http://bio2rdf.org/iproclass_vocabulary:x-gi
gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource
95540862 96743567
x refseq [iproclass_vocabulary:x-refseq]
http://bio2rdf.org/iproclass_vocabulary:x-refseq
refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource
20380462 20517760

Type-Property-Type List

Total Subjects Distinct Subjects Subject Type Property Object Type Distinct Objects Total Objects

Dataset-Property-Dataset List

Dataset Property Dataset
iproclass x omim [iproclass_vocabulary:x-omim]
http://bio2rdf.org/iproclass_vocabulary:x-omim
omim
iproclass x go [iproclass_vocabulary:x-go]
http://bio2rdf.org/iproclass_vocabulary:x-go
go
iproclass x pfam [iproclass_vocabulary:x-pfam]
http://bio2rdf.org/iproclass_vocabulary:x-pfam
pfam
iproclass x ipi [iproclass_vocabulary:x-ipi]
http://bio2rdf.org/iproclass_vocabulary:x-ipi
ipi
iproclass x unigene [iproclass_vocabulary:x-unigene]
http://bio2rdf.org/iproclass_vocabulary:x-unigene
unigene
iproclass x refseq [iproclass_vocabulary:x-refseq]
http://bio2rdf.org/iproclass_vocabulary:x-refseq
refseq
iproclass x gi [iproclass_vocabulary:x-gi]
http://bio2rdf.org/iproclass_vocabulary:x-gi
gi
iproclass x uniparc [iproclass_vocabulary:x-uniparc]
http://bio2rdf.org/iproclass_vocabulary:x-uniparc
uniparc
iproclass x taxon [iproclass_vocabulary:x-taxon]
http://bio2rdf.org/iproclass_vocabulary:x-taxon
taxonomy
iproclass x pirsf [iproclass_vocabulary:x-pirsf]
http://bio2rdf.org/iproclass_vocabulary:x-pirsf
pirsf
iproclass x pubmed [iproclass_vocabulary:x-pubmed]
http://bio2rdf.org/iproclass_vocabulary:x-pubmed
pubmed
iproclass x genbank [iproclass_vocabulary:x-genbank]
http://bio2rdf.org/iproclass_vocabulary:x-genbank
genbank
iproclass x ncbigene [iproclass_vocabulary:x-ncbigene]
http://bio2rdf.org/iproclass_vocabulary:x-ncbigene
ncbigene
iproclass x ensembl [iproclass_vocabulary:x-ensembl]
http://bio2rdf.org/iproclass_vocabulary:x-ensembl
ensembl
iproclass x pdb [iproclass_vocabulary:x-pdb]
http://bio2rdf.org/iproclass_vocabulary:x-pdb
pdb
iproclass x uniprot [iproclass_vocabulary:x-uniprot]
http://bio2rdf.org/iproclass_vocabulary:x-uniprot
uniprot