NCBI Homologene

HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.

Keywords: gene, genome

Homepage: http://wwww.ncbi.nlm.nih.gov/homologene

Organization: NCBI

Identifier Regex Pattern: ^\d+$

SPARQL Endpoint URL: http://cu.homologene.bio2rdf.org/sparql

Faceted Browser URL: http://cu.homologene.bio2rdf.org/fct

Conversion Script URL: http://github.com/bio2rdf/bio2rdf-scripts/tree/master/homologene

Download URL: http://download.bio2rdf.org/release/3/homologene

Basic metrics

Triples7189769
Distinct Entities869985
Distinct Properties24
Distinct Subjects869985
Distinct Objects1420482
Distinct Literals2865030
Distinct Types9

Types

Type Count
Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
44233
ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource
275237
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
21
homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
44239
gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource
275237
refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource
275237
http://www.w3.org/2000/01/rdf-schema#Resource 5
http://www.w3.org/ns/dcat#Distribution 2
http://www.w3.org/2002/07/owl#ObjectProperty 6
http://www.w3.org/2002/07/owl#DatatypeProperty 4
http://purl.org/dc/terms/Dataset 2
http://www.w3.org/2002/07/owl#Class 1

Object Properties

Object Property Distinct Objects Total Objects
x ncbigene [homologene_vocabulary:x-ncbigene]
http://bio2rdf.org/homologene_vocabulary:x-ncbigene
275237 275237
identifiers.org URI
http://bio2rdf.org/bio2rdf_vocabulary:x-identifiers.org
594728 594728
x refseq [homologene_vocabulary:x-refseq]
http://bio2rdf.org/homologene_vocabulary:x-refseq
275237 275237
x gi [homologene_vocabulary:x-gi]
http://bio2rdf.org/homologene_vocabulary:x-gi
275237 275237
x taxid [homologene_vocabulary:x-taxid]
http://bio2rdf.org/homologene_vocabulary:x-taxid
21 233935
http://rdfs.org/ns/void#inDataset 1 869971
http://purl.org/dc/terms/publisher 2 2
http://purl.org/dc/terms/license 2 2
http://purl.org/dc/terms/creator 1 1
http://xmlns.com/foaf/0.1/page 2 2
http://www.w3.org/1999/02/22-rdf-syntax-ns#type 12 914224
http://www.w3.org/ns/dcat#distribution 2 2
http://purl.org/dc/terms/source 1 1

Datatype Properties

Datatype Property Distinct Literals Literals
Bio2RDF identifier
http://bio2rdf.org/bio2rdf_vocabulary:identifier
857986 869971
Bio2RDF namespace
http://bio2rdf.org/bio2rdf_vocabulary:namespace
6 869971
Bio2RDF uri
http://bio2rdf.org/bio2rdf_vocabulary:uri
869971 869971
gene symbol [homologene_vocabulary:gene-symbol]
http://bio2rdf.org/homologene_vocabulary:gene-symbol
178598 182805
http://purl.org/dc/terms/title 44241 44241
http://purl.org/dc/terms/format 3 3
http://purl.org/pav/retrievedOn 1 1
http://www.w3.org/2000/01/rdf-schema#label 44251 44251
http://purl.org/dc/terms/rights 3 4
http://purl.org/dc/terms/identifier 869971 869971
http://purl.org/dc/terms/created 1 1

Subject Type and Property

Unique Objects Total Objects Subject Type Property
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
Bio2RDF uri
http://bio2rdf.org/bio2rdf_vocabulary:uri
44233 275237 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
x refseq [homologene_vocabulary:x-refseq]
http://bio2rdf.org/homologene_vocabulary:x-refseq
44233 275237 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
x gi [homologene_vocabulary:x-gi]
http://bio2rdf.org/homologene_vocabulary:x-gi
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
identifiers.org URI
http://bio2rdf.org/bio2rdf_vocabulary:x-identifiers.org
44233 275237 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
x ncbigene [homologene_vocabulary:x-ncbigene]
http://bio2rdf.org/homologene_vocabulary:x-ncbigene
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
Bio2RDF identifier
http://bio2rdf.org/bio2rdf_vocabulary:identifier
44233 233935 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
x taxid [homologene_vocabulary:x-taxid]
http://bio2rdf.org/homologene_vocabulary:x-taxid
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
Bio2RDF namespace
http://bio2rdf.org/bio2rdf_vocabulary:namespace
44233 182805 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
gene symbol [homologene_vocabulary:gene-symbol]
http://bio2rdf.org/homologene_vocabulary:gene-symbol
1 1 http://www.w3.org/2002/07/owl#Class Bio2RDF uri
http://bio2rdf.org/bio2rdf_vocabulary:uri
4 4 http://www.w3.org/2002/07/owl#ObjectProperty Bio2RDF namespace
http://bio2rdf.org/bio2rdf_vocabulary:namespace
1 1 http://www.w3.org/2002/07/owl#DatatypeProperty Bio2RDF uri
http://bio2rdf.org/bio2rdf_vocabulary:uri
1 1 http://www.w3.org/2002/07/owl#DatatypeProperty Bio2RDF identifier
http://bio2rdf.org/bio2rdf_vocabulary:identifier
4 4 http://www.w3.org/2002/07/owl#ObjectProperty Bio2RDF uri
http://bio2rdf.org/bio2rdf_vocabulary:uri
1 1 http://www.w3.org/2002/07/owl#DatatypeProperty Bio2RDF namespace
http://bio2rdf.org/bio2rdf_vocabulary:namespace
4 4 http://www.w3.org/2002/07/owl#ObjectProperty Bio2RDF identifier
http://bio2rdf.org/bio2rdf_vocabulary:identifier
1 1 http://www.w3.org/2002/07/owl#Class Bio2RDF namespace
http://bio2rdf.org/bio2rdf_vocabulary:namespace
1 1 http://www.w3.org/2002/07/owl#Class Bio2RDF identifier
http://bio2rdf.org/bio2rdf_vocabulary:identifier
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://purl.org/dc/terms/title
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://purl.org/dc/terms/identifier
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://www.w3.org/2000/01/rdf-schema#label
44233 88466 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://rdfs.org/ns/void#inDataset
1 1 http://www.w3.org/2002/07/owl#DatatypeProperty http://rdfs.org/ns/void#inDataset
1 1 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/created
2 2 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/license
6 10 http://www.w3.org/2002/07/owl#ObjectProperty http://www.w3.org/1999/02/22-rdf-syntax-ns#type
1 1 http://www.w3.org/2002/07/owl#DatatypeProperty http://purl.org/dc/terms/identifier
1 1 http://www.w3.org/2002/07/owl#Class http://rdfs.org/ns/void#inDataset
1 1 http://www.w3.org/2002/07/owl#Class http://purl.org/dc/terms/identifier
4 4 http://www.w3.org/2002/07/owl#ObjectProperty http://purl.org/dc/terms/title
2 2 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/title
1 2 http://www.w3.org/2002/07/owl#Class http://www.w3.org/1999/02/22-rdf-syntax-ns#type
4 5 http://www.w3.org/2002/07/owl#DatatypeProperty http://www.w3.org/1999/02/22-rdf-syntax-ns#type
2 3 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/format
2 2 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/publisher
5 5 http://www.w3.org/2000/01/rdf-schema#Resource http://www.w3.org/2000/01/rdf-schema#label
4 4 http://www.w3.org/2002/07/owl#ObjectProperty http://purl.org/dc/terms/identifier
5 5 http://www.w3.org/2000/01/rdf-schema#Resource http://www.w3.org/1999/02/22-rdf-syntax-ns#type
6 6 http://www.w3.org/2002/07/owl#ObjectProperty http://www.w3.org/2000/01/rdf-schema#label
2 2 http://www.w3.org/ns/dcat#Distribution http://www.w3.org/1999/02/22-rdf-syntax-ns#type
2 2 http://www.w3.org/ns/dcat#Distribution http://xmlns.com/foaf/0.1/page
2 2 http://www.w3.org/ns/dcat#Distribution http://www.w3.org/2000/01/rdf-schema#label
4 4 http://www.w3.org/2002/07/owl#DatatypeProperty http://www.w3.org/2000/01/rdf-schema#label
2 4 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/rights
1 1 http://www.w3.org/2002/07/owl#Class http://purl.org/dc/terms/title
1 1 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/source
2 2 http://purl.org/dc/terms/Dataset http://www.w3.org/ns/dcat#distribution
1 1 http://www.w3.org/ns/dcat#Distribution http://purl.org/pav/retrievedOn
1 1 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/creator
1 1 http://www.w3.org/2002/07/owl#Class http://www.w3.org/2000/01/rdf-schema#label
1 1 http://www.w3.org/2002/07/owl#DatatypeProperty http://purl.org/dc/terms/title
2 2 http://purl.org/dc/terms/Dataset http://www.w3.org/1999/02/22-rdf-syntax-ns#type
4 4 http://www.w3.org/2002/07/owl#ObjectProperty http://rdfs.org/ns/void#inDataset

Property and Object Type

Property Object Type Unique Objects Total Objects
x refseq [homologene_vocabulary:x-refseq]
http://bio2rdf.org/homologene_vocabulary:x-refseq
refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource
275237 275237
x gi [homologene_vocabulary:x-gi]
http://bio2rdf.org/homologene_vocabulary:x-gi
gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource
275237 275237
x taxid [homologene_vocabulary:x-taxid]
http://bio2rdf.org/homologene_vocabulary:x-taxid
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
21 233935
x ncbigene [homologene_vocabulary:x-ncbigene]
http://bio2rdf.org/homologene_vocabulary:x-ncbigene
ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource
275237 275237
http://www.w3.org/1999/02/22-rdf-syntax-ns#type homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
1 44233
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 5 869971
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class 1 44233
http://purl.org/dc/terms/source http://www.w3.org/ns/dcat#Distribution 1 1
http://www.w3.org/ns/dcat#distribution http://www.w3.org/ns/dcat#Distribution 2 2
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 869971

Type-Property-Type List

Total Subjects Distinct Subjects Subject Type Property Object Type Distinct Objects Total Objects
233935 44233 homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
x taxid [homologene_vocabulary:x-taxid]
http://bio2rdf.org/homologene_vocabulary:x-taxid
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
21 233935
233935 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
x taxid [homologene_vocabulary:x-taxid]
http://bio2rdf.org/homologene_vocabulary:x-taxid
taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
21 233935
275237 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
x gi [homologene_vocabulary:x-gi]
http://bio2rdf.org/homologene_vocabulary:x-gi
gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource
275237 275237
275237 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
x refseq [homologene_vocabulary:x-refseq]
http://bio2rdf.org/homologene_vocabulary:x-refseq
refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource
275237 275237
275237 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
x ncbigene [homologene_vocabulary:x-ncbigene]
http://bio2rdf.org/homologene_vocabulary:x-ncbigene
ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource
275237 275237
275237 44233 homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
x gi [homologene_vocabulary:x-gi]
http://bio2rdf.org/homologene_vocabulary:x-gi
gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource
275237 275237
275237 44233 homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
x ncbigene [homologene_vocabulary:x-ncbigene]
http://bio2rdf.org/homologene_vocabulary:x-ncbigene
ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource
275237 275237
275237 44233 homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
x refseq [homologene_vocabulary:x-refseq]
http://bio2rdf.org/homologene_vocabulary:x-refseq
refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource
275237 275237
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://www.w3.org/1999/02/22-rdf-syntax-ns#type homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
1 44233
44233 44233 homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
http://www.w3.org/1999/02/22-rdf-syntax-ns#type homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
1 44233
275237 275237 refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 275237
275237 275237 gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 275237
275237 275237 ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 275237
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class 1 44233
44233 44233 homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class 1 44233
21 21 taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 21
275237 275237 refseq resource [refseq_vocabulary:Resource]
http://bio2rdf.org/refseq_vocabulary:Resource
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 275237
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 44233
275237 275237 ncbigene resource [ncbigene_vocabulary:Resource]
http://bio2rdf.org/ncbigene_vocabulary:Resource
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 275237
21 21 taxonomy resource [taxonomy_vocabulary:Resource]
http://bio2rdf.org/taxonomy_vocabulary:Resource
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 21
44233 44233 Homologene Group [homologene_vocabulary:Homologene-Group]
http://bio2rdf.org/homologene_vocabulary:Homologene-Group
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 44233
44239 44239 homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 44239
44239 44239 homologene resource [homologene_vocabulary:Resource]
http://bio2rdf.org/homologene_vocabulary:Resource
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 44239
275237 275237 gi resource [gi_vocabulary:Resource]
http://bio2rdf.org/gi_vocabulary:Resource
http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 275237
1 1 http://www.w3.org/2002/07/owl#Class http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 1
1 1 http://www.w3.org/2002/07/owl#DatatypeProperty http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 1
4 4 http://www.w3.org/2002/07/owl#ObjectProperty http://rdfs.org/ns/void#inDataset http://purl.org/dc/terms/Dataset 1 4
1 1 http://www.w3.org/2002/07/owl#Class http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 1
1 1 http://www.w3.org/2002/07/owl#DatatypeProperty http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 1
2 2 http://purl.org/dc/terms/Dataset http://www.w3.org/ns/dcat#distribution http://www.w3.org/ns/dcat#Distribution 2 2
1 1 http://www.w3.org/ns/dcat#Distribution http://purl.org/dc/terms/source http://www.w3.org/ns/dcat#Distribution 1 1
4 4 http://www.w3.org/2002/07/owl#ObjectProperty http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#Resource 1 4

Dataset-Property-Dataset List

Dataset Property Dataset
homologene x ncbigene [homologene_vocabulary:x-ncbigene]
http://bio2rdf.org/homologene_vocabulary:x-ncbigene
ncbigene
homologene x taxid [homologene_vocabulary:x-taxid]
http://bio2rdf.org/homologene_vocabulary:x-taxid
taxonomy
homologene x refseq [homologene_vocabulary:x-refseq]
http://bio2rdf.org/homologene_vocabulary:x-refseq
refseq
homologene x gi [homologene_vocabulary:x-gi]
http://bio2rdf.org/homologene_vocabulary:x-gi
gi