SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured.

Keywords: reaction

Namespace: sabiork

Homepage: http://sabiork.h-its.org/

Organization: Heidelberg Institute for Theoretical Studies

License: Users granted a non-exclusive and non-transferable license to use the Database according to the following terms and conditions. This license is to use the Database for Non-Commercial Purpose only. Non-Commercial Purpose means the use of the Database solely for internal non-commercial research and academic purposes. Non-Commercial Purpose excludes, without limitation, any use of the Database, as part of, or in any way in connection with a product or service which is sold, offered for sale, licensed, leased, loaned, or rented. Permission to use this Database for Non-Commercial Purpose is hereby granted without fee and subject to the following terms of this license.

SPARQL Endpoint URL: http://cu.sabiork.bio2rdf.org/sparql

Faceted Browser URL: http://cu.sabiork.bio2rdf.org/fct

Conversion Script URL: http://github.com/bio2rdf/bio2rdf-scripts/tree/master/sabiork

Download URL: http://download.bio2rdf.org/release/2/sabiork

Basic data metrics

Endpoint URLhttp://cu.sabiork.bio2rdf.org/sparql
Number of Triples2618288
Unique Subject count393157
Unique Predicate count41
Unique Object count797554

List of unique types and their frequencies

Type URICount
http://www.w3.org/2002/07/owl#Ontology1
http://www.w3.org/2002/07/owl#AnnotationProperty1
http://www.w3.org/2002/07/owl#ObjectProperty19
http://www.w3.org/2002/07/owl#DatatypeProperty9
http://www.biopax.org/release/biopax-level3.owl#BioSource646
http://www.biopax.org/release/biopax-level3.owl#Conversion5609
http://www.sbpax.org/uome/core.owl#UnitOfMeasurement114
http://www.biopax.org/release/biopax-level3.owl#TissueVocabulary252
http://www.biopax.org/release/biopax-level3.owl#Catalysis35890
http://www.biopax.org/release/biopax-level3.owl#Complex2161
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule10859
http://www.biopax.org/release/biopax-level3.owl#Stoichiometry4653
http://www.biopax.org/release/biopax-level3.owl#Modulation11523
http://vcell.org/sbpax3#SBVocabulary50
http://www.biopax.org/release/biopax-level3.owl#SmallMoleculeReference7209
http://vcell.org/sbpax3#SBEntity35649
http://vcell.org/sbpax3#SBMeasurable219535
http://www.biopax.org/release/biopax-level3.owl#Protein29461
http://www.biopax.org/release/biopax-level3.owl#ProteinReference2533
http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity8584
http://www.biopax.org/release/biopax-level3.owl#CellularLocationVocabulary61
http://rdfs.org/ns/void#Dataset2
http://www.biopax.org/release/biopax-level3.owl#UnificationXref61

List of the unique predicate-object links and their counts

Predicate URIObject Count
http://vcell.org/sbpax3#SBVocabulary67878
http://www.biopax.org/release/biopax-level3.owl#right15683
http://rdfs.org/ns/void#dataDump5623
http://www.biopax.org/release/biopax-level3.owl#xref96
http://www.w3.org/2002/07/owl#imports4
http://rdfs.org/ns/void#inDataset393119
http://www.w3.org/1999/02/22-rdf-syntax-ns#type374882
http://www.biopax.org/release/biopax-level3.owl#controlled47413
http://www.biopax.org/release/biopax-level3.owl#controller47413
http://www.biopax.org/release/biopax-level3.owl#entityReference40328
http://www.biopax.org/release/biopax-level3.owl#organism14905
http://bio2rdf.org/biopax_vocabulary:identical-to12172
http://www.biopax.org/release/biopax-level3.owl#physicalEntity4653
http://www.w3.org/2000/01/rdf-schema#seeAlso1
http://www.w3.org/ns/prov#wasDerivedFrom1
http://www.w3.org/2002/07/owl#sameAs370085
http://vcell.org/sbpax3#sbSubEntity362007
http://vcell.org/sbpax3#sbTerm230291
http://vcell.org/sbpax3#hasUnit201135
http://www.biopax.org/release/biopax-level3.owl#left16113
http://bio2rdf.org/biopax_vocabulary:related-to11767
http://www.biopax.org/release/biopax-level3.owl#componentStoichiometry4782
http://www.biopax.org/release/biopax-level3.owl#component4730
http://bio2rdf.org/biopax_vocabulary:publication217
http://purl.org/dc/terms/creator1
http://purl.org/dc/terms/publisher1
http://xmlns.com/foaf/0.1/homepage1
http://rdfs.org/ns/void#sparqlEndpoint1

List of the unique predicate-literal links and their counts

Predicate URILiteral Count
http://www.biopax.org/release/biopax-level3.owl#name47117
http://purl.org/dc/terms/identifier18262
http://www.biopax.org/release/biopax-level3.owl#eCNumber6857
http://www.sbpax.org/uome/core.owl#unitSymbol114
http://www.biopax.org/release/biopax-level3.owl#term312
http://purl.org/dc/terms/rights5
http://purl.org/dc/terms/created1
http://vcell.org/sbpax3#hasNumber201594
http://www.w3.org/2000/01/rdf-schema#label38873
http://www.biopax.org/release/biopax-level3.owl#displayName38557
http://www.biopax.org/release/biopax-level3.owl#db18323
http://www.biopax.org/release/biopax-level3.owl#id18320
http://www.biopax.org/release/biopax-level3.owl#stoichiometricCoefficient4651

List of the total number of unique subject-predicate-unique object links

Subject CountPredicate URIObject Count
374882http://www.w3.org/1999/02/22-rdf-syntax-ns#type23
1http://www.w3.org/2002/07/owl#imports4
1http://purl.org/dc/terms/creator1
1http://purl.org/dc/terms/publisher1
13416http://www.biopax.org/release/biopax-level3.owl#organism647
2161http://www.biopax.org/release/biopax-level3.owl#componentStoichiometry4782
201135http://vcell.org/sbpax3#hasUnit116
47413http://www.biopax.org/release/biopax-level3.owl#controller38119
4653http://www.biopax.org/release/biopax-level3.owl#physicalEntity4599
1http://www.w3.org/2000/01/rdf-schema#seeAlso1
1http://xmlns.com/foaf/0.1/homepage1
393119http://rdfs.org/ns/void#inDataset1
2161http://www.biopax.org/release/biopax-level3.owl#component4730
230291http://vcell.org/sbpax3#sbTerm51
40137http://www.biopax.org/release/biopax-level3.owl#entityReference9749
47413http://www.biopax.org/release/biopax-level3.owl#controlled15399
67878http://vcell.org/sbpax3#SBVocabulary2
5609http://www.biopax.org/release/biopax-level3.owl#right5271
1http://www.w3.org/ns/prov#wasDerivedFrom1
370085http://www.w3.org/2002/07/owl#sameAs370085
7284http://bio2rdf.org/biopax_vocabulary:identical-to11958
178669http://vcell.org/sbpax3#sbSubEntity275227
10517http://bio2rdf.org/biopax_vocabulary:related-to6124
5609http://www.biopax.org/release/biopax-level3.owl#left5556
88http://www.biopax.org/release/biopax-level3.owl#xref96
183http://bio2rdf.org/biopax_vocabulary:publication189
1http://rdfs.org/ns/void#dataDump5623
1http://rdfs.org/ns/void#sparqlEndpoint1

List of the total number of unique subject-predicate-unique literal links

Subject CountPredicate URILiteral Count
114http://www.sbpax.org/uome/core.owl#unitSymbol41
1http://purl.org/dc/terms/created1
18262http://purl.org/dc/terms/identifier18262
312http://www.biopax.org/release/biopax-level3.owl#term312
2http://purl.org/dc/terms/rights5
38873http://www.w3.org/2000/01/rdf-schema#label3920
18323http://www.biopax.org/release/biopax-level3.owl#db12
38556http://www.biopax.org/release/biopax-level3.owl#displayName3607
47115http://www.biopax.org/release/biopax-level3.owl#name9005
4651http://www.biopax.org/release/biopax-level3.owl#stoichiometricCoefficient10
201136http://vcell.org/sbpax3#hasNumber16751
5608http://www.biopax.org/release/biopax-level3.owl#eCNumber1215
18320http://www.biopax.org/release/biopax-level3.owl#id18183

List of the total number of subject type-predicate-object type links

Subject TypeSubject CountPredicateObject TypeObject Count
http://vcell.org/sbpax3#SBVocabulary50http://www.w3.org/1999/02/22-rdf-syntax-ns#typehttp://www.w3.org/2002/07/owl#ObjectProperty1
http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity8584http://www.biopax.org/release/biopax-level3.owl#organismhttp://www.biopax.org/release/biopax-level3.owl#BioSource350
http://www.biopax.org/release/biopax-level3.owl#Modulation8http://www.biopax.org/release/biopax-level3.owl#controlledhttp://www.biopax.org/release/biopax-level3.owl#Conversion4
http://vcell.org/sbpax3#SBMeasurable133259http://vcell.org/sbpax3#hasUnithttp://www.sbpax.org/uome/core.owl#UnitOfMeasurement114
http://www.biopax.org/release/biopax-level3.owl#Conversion5609http://www.biopax.org/release/biopax-level3.owl#lefthttp://www.biopax.org/release/biopax-level3.owl#SmallMolecule5556
http://www.biopax.org/release/biopax-level3.owl#Conversion5609http://www.biopax.org/release/biopax-level3.owl#righthttp://www.biopax.org/release/biopax-level3.owl#SmallMolecule5271
http://www.biopax.org/release/biopax-level3.owl#Modulation11523http://www.biopax.org/release/biopax-level3.owl#controllerhttp://www.biopax.org/release/biopax-level3.owl#SmallMolecule2286
http://www.biopax.org/release/biopax-level3.owl#Complex2120http://www.biopax.org/release/biopax-level3.owl#componentStoichiometryhttp://www.biopax.org/release/biopax-level3.owl#Stoichiometry4653
http://vcell.org/sbpax3#SBMeasurable185748http://vcell.org/sbpax3#sbTermhttp://vcell.org/sbpax3#SBVocabulary26
http://vcell.org/sbpax3#SBMeasurable34609http://vcell.org/sbpax3#SBVocabularyhttp://vcell.org/sbpax3#SBVocabulary1
http://www.biopax.org/release/biopax-level3.owl#Complex2116http://www.biopax.org/release/biopax-level3.owl#componenthttp://www.biopax.org/release/biopax-level3.owl#Protein4592
http://www.biopax.org/release/biopax-level3.owl#Stoichiometry4646http://www.biopax.org/release/biopax-level3.owl#physicalEntityhttp://www.biopax.org/release/biopax-level3.owl#Protein4592
http://www.biopax.org/release/biopax-level3.owl#Protein29069http://www.biopax.org/release/biopax-level3.owl#entityReferencehttp://www.biopax.org/release/biopax-level3.owl#ProteinReference2508
http://vcell.org/sbpax3#SBMeasurable2468http://vcell.org/sbpax3#sbSubEntityhttp://www.biopax.org/release/biopax-level3.owl#PhysicalEntity2463
http://rdfs.org/ns/void#Dataset1http://www.w3.org/ns/prov#wasDerivedFromhttp://rdfs.org/ns/void#Dataset1
http://www.biopax.org/release/biopax-level3.owl#UnificationXref61http://rdfs.org/ns/void#inDatasethttp://rdfs.org/ns/void#Dataset1
http://www.biopax.org/release/biopax-level3.owl#CellularLocationVocabulary61http://www.biopax.org/release/biopax-level3.owl#xrefhttp://www.biopax.org/release/biopax-level3.owl#UnificationXref61

Inter and Intra dataset namespace links

NamespaceNamespaceCounts
http://bio2rdf.org/pubmedhttp://bio2rdf.org/sabiork217
http://bio2rdf.org/pubmedhttp://bio2rdf.org/bio2rdf_dataset217
http://bio2rdf.org/directsubmissionhttp://bio2rdf.org/sabiork4
http://bio2rdf.org/directsubmissionhttp://bio2rdf.org/bio2rdf_dataset4
http://bio2rdf.org/btohttp://bio2rdf.org/bio2rdf_dataset3838
http://bio2rdf.org/btohttp://bio2rdf.org/sabiork3838
http://bio2rdf.org/chebihttp://bio2rdf.org/bio2rdf_dataset31387
http://bio2rdf.org/chebihttp://bio2rdf.org/sabiork31387
http://bio2rdf.org/echttp://bio2rdf.org/sabiork6901
http://bio2rdf.org/echttp://bio2rdf.org/bio2rdf_dataset6901
http://bio2rdf.org/kegghttp://bio2rdf.org/bio2rdf_dataset25384
http://bio2rdf.org/kegghttp://bio2rdf.org/sabiork25384
http://bio2rdf.org/pubchemcompoundhttp://bio2rdf.org/sabiork21494
http://bio2rdf.org/pubchemcompoundhttp://bio2rdf.org/bio2rdf_dataset21494
http://bio2rdf.org/sabiorkcompoundhttp://bio2rdf.org/bio2rdf_dataset7397
http://bio2rdf.org/sabiorkcompoundhttp://bio2rdf.org/sabiork7397
http://bio2rdf.org/bio2rdf_datasethttp://bio2rdf.org/sabiork492398
http://bio2rdf.org/taxonhttp://bio2rdf.org/sabiork9667
http://bio2rdf.org/taxonhttp://bio2rdf.org/bio2rdf_dataset9667
http://bio2rdf.org/sbohttp://bio2rdf.org/sabiork34250
http://bio2rdf.org/sbohttp://bio2rdf.org/bio2rdf_dataset34250
http://bio2rdf.org/uniprothttp://bio2rdf.org/sabiork8394
http://bio2rdf.org/uniprothttp://bio2rdf.org/bio2rdf_dataset8394