DatasetDate generated# of triples# of unique subjects# of unique predicates# of unique objects
1Affymetrix probesets [affymetrix]
This dataset contains the probesets used in the Affymetrix microarrays.
Homepage: http://www.affymetrix.com/
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-044446961113702197913097194
2Bio2RDF Atlas [atlas]
The Bio2RDF Atlas mashup
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-1530993206155865025612291465
3A Database of Annotated Published Models [biomodels]
BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.
Homepage: http://www.ebi.ac.uk/biomodels/
Example ID: BIOMD0000000048
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-185897538767138209005
4BioPortal [bioportal]
BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.
Homepage: http://bioportal.bioontology.org/
Example ID: 1046
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-071538462244253421917668644
5Comparative Toxicogenomics Database [ctd]
CTD includes manually curated data describing cross-species chemical-gene/protein interactions and chemical- and gene-disease relationships to illuminate molecular mechanisms underlying variable susceptibility and environmentally influenced diseases.
Homepage: http://ctd.mdibl.org
Example ID: D001151
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-15151485732136275662714136295
6DrugBank [drugbank]
The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information.
Homepage: http://www.drugbank.ca/
Example ID: DB00001
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-08112146817208475526976
7NCBI Gene [gene]
NCBI Gene provides information for genes from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
Homepage: http://www.ncbi.nlm.nih.gov/gene
Example ID: 100010
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-063940262671254344960121538103
8GenBank [genbank]
GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences.
Homepage: http://www.ncbi.nlm.nih.gov/genbank/
Example ID: AP008229
Links: SEARCH QUERY DOWNLOAD
2010-08-036973521884932183206190
9Gene Ontology Annotation [goa]
The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.
Homepage: http://www.ebi.ac.uk/GOA
Example ID: GO:0006915
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-178002887347101652819924391
10HUGO Gene Nomenclature Committee [hgnc]
The HGNC gives unique and meaningful names to every human gene. For each known human gene we approve a gene name and symbol (short-form abbreviation). All approved symbols are stored in the HGNC database.
Homepage: http://www.genenames.org/
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-158360603722744519628
11Bio2RDF HIV-1 human protein interactions [hhpid]
A database of HIV-1 human protein interactions that was created to catalog all interactions between HIV-1 and human proteins published in the peer-reviewed literature. The database serves the scientific community exploring the discovery of novel HIV vaccine candidates and therapeutic targets.
Links: SEARCH QUERY DOWNLOAD
2012-10-1524131718687149882
12NCBI Homologene [homologene]
HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.
Homepage: http://wwww.ncbi.nlm.nih.gov/homologene
Example ID: 1000
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-15128188143605171011783
13Integrated resource of protein families, domains and functional sites [interpro]
InterPro is an integrated database of predictive protein "signatures" used for the classification and automatic annotation of proteins and genomes. InterPro classifies sequences at superfamily, family and subfamily levels, predicting the occurrence of functional domains, repeats and important sites.
Homepage: http://www.ebi.ac.uk/interpro
Example ID: IPR000100
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-019990312379434211346
14Integrated Protein Knowledgebase [iproclass]
The iProClass database provides value-added information reports for UniProtKB and unique UniParc proteins, with links to over 90 biological databases, including databases for protein families, functions and pathways, interactions, structures and structural classifications, genes and genomes, ontologies, literature, and taxonomy.
Homepage: http://pir.georgetown.edu/iproclass/
Example ID: P07359
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-20211365460116800532997484111
15Interaction Reference Index [irefindex]
iRefIndex provides an index of protein interactions available in a number of primary interaction databases including BIND, BioGRID, CORUM, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID. This index includes multiple interaction types including physical and genetic (mapped to their corresponding protein products) as determined by a multitude of methods.
Homepage: http://irefindex.uio.no
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-16310421351933717324276466
16Kyoto Encyclopedia of Genes and Genomes [kegg]
KEGG is an integrated database resource consisting of 16 main databases, broadly categorized into biological systems information, genomic information, and chemical information.
Homepage: http://www.genome.jp/kegg/
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-154985077411816543338338160
17Medical Subject Headings [mesh]
The MeSH Browser is an online vocabulary look-up aid available for use with MeSH (Medical Subject Headings). It is designed to help quickly locate descriptors of possible interest and to show the hierarchy in which descriptors of interest appear.
Homepage: http://www.nlm.nih.gov/mesh/meshhome.html
Example ID: D018377
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-154172230232573601405919
18Mouse genome database (MGD) from Mouse Genome Informatics (MGI) [mgi]
The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.
Homepage: http://www.informatics.jax.org/
Example ID: 3693955
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-152454589250933271178016
19National Drug Code Directory [ndc]
The National Drug Code (NDC) is a unique product identifier used in the United States for drugs intended for human use.
Homepage: http://www.accessdata.fda.gov/scripts/cder/ndc/default.cfm
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-14189111130165430650650
20Online Mendelian Inheritance in Man [omim]
OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype.
Homepage: http://www.ncbi.nlm.nih.gov/omim/
Example ID: 603903
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-141840729205821611305149
21Pharmacogenomics Knowledge Base [pharmgkb]
PharmGKB curates primary genotype and phenotype data, annotates gene variants and gene-drug-disease relationships via literature review, and summarizes important PGx genes and drug pathways.
Homepage: http://www.pharmgkb.org/index.jsp
Example ID: PA445062
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-15142782063303211534336036047
22PubMed [pubmed]
PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.
Homepage: http://www.ncbi.nlm.nih.gov/pubmed/
Example ID: 16333295
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-243708128667256375124590175085
23Reference Sequence Database [refseq]
The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins.
Homepage: http://www.ncbi.nlm.nih.gov/RefSeq/
Example ID: NP_012345
Links: SEARCH QUERY DOWNLOAD
2010-08-044242289458399870058
24 [sabiork]
SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured.
Homepage: http://sabiork.h-its.org/
Links: SEARCH QUERY DOWNLOAD METRICS
2012-09-18261828839315741797554
25Saccharomyces Genome Database [sgd]
The Saccharomyces Genome Database (SGD) collects and organizes information about the molecular biology and genetics of the yeast Saccharomyces cerevisiae. SGD contains a variety of biological information and tools with which to search and analyze it.
Homepage: http://www.yeastgenome.org/
Example ID: S000028457
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-155669732739136621228685
26NCBI Taxonomy [taxonomy]
The NCBI taxonomy database contains the names of all organisms that are represented in the genetic databases with at least one nucleotide or protein sequence.
Homepage: http://www.ncbi.nlm.nih.gov/taxonomy
Example ID: 9606
Links: SEARCH QUERY DOWNLOAD METRICS
2012-10-0617814216965020332467675
27Toxicogenomics Knowledge Base [toxkb]
A toxicogenomics database mashup.
Links: SEARCH QUERY
2011-01-01183849555185439576416
28UniProt Knowledgebase [uniprot]
UniProtKB consists of the manually annotated and reviewed Swiss-Prot, the automatically annotated TrEMBL, and the PIR protein databases.
Homepage: http://www.uniprot.org/
Example ID: P62158
Links: DOWNLOAD
2010-08-05